I work in the Division of Oncology at Washington University in St. Louis, where I develop and apply
computational tools to give us insight into the origins and progression of cancer.
My core research interests include:
Cancer - studying the genomic alterations that result in tumorigenesis
The clonal architecture of tumors and how they evolve in response to therapy
Integrative analysis to place genomic aberrations into a functional context
Effective design and targeting of cancer immunotherapies
Developing open-source software for integrating, mining, and visualizing genomic data
Utilizing technology to drive science communication and collaboration
The clonal evolution of metastatic colorectal cancer Dang HX, Krasnick BA, White BS, Grossman JG, Strand MS, Zhang J, Cabanski CR, Miller CA, Fulton RS, Goedegebuure SP, et al.. Science Advances. 2020. doi:10.1126/sciadv.aay9691
Genomic and Transcriptional evolution of AML at single-cell resolution
Institute of Medical Informatics - Münster, Germany (2021)
Sequencing, Variant Calling, and Cancer Genomics
Genomics Education Partnership (GEP) Workshop (2020)
Tumor Heterogeneity and Evolution
Genomics in Medicine Seminar Series (2019)
Characterizing genomic responses to cancer immunotherapy
Genome Informatics (2016)
Genomic insights into tumor evolution and therapy response
Festival of Genomics Boston (2016)
Assessing tumor heterogeneity and tracking clonal clearance in response to therapy
Genome Informatics (2015)
Ultra-deep whole-genome sequencing reveals clinically relevant low-frequency subclones in an acute myeloid leukemia
The Cancer Genome Atlas Symposium (2014)
SciClone: Inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution and therapy resistance
Personal Genomes & Pharmacogenomics (2013)
Multi-dimensional clustering of mutations from heterogeneous tumors offers insight into clonal architecture, tumor evolution, and response to therapy
The Cancer Genome Atlas Steering Committee Meeting (2013)
Assessing Tumor Heterogeneity and Tracking Clonal Evolution Using Whole Genome or Exome Sequencing
The Cancer Genome Atlas Scientific Symposium (2012) link
An Image Analytic Approach to Characterizing Vasculogenic Networks
Presentation: Truman State University Student Research Symposium (2005)
Computer Aided Discovery Methods (2007 and 2008)
co-developer of the course and taught computational labs on:
Studies of genome variation
Transcriptional regulatory pathways
Computational Mathematics for Biomedical Scientists (2008)
Teaching Assistant
Advanced Topics: Quantitative Biology (2005)
Teaching Assistant
Editorial
Ad-hoc reviewer for Bioinformatics, Cancer Cell, Genome Biology, PLoS Computational Biology, Nucleic Acids Research, Nature Communications, BMC Evolutionary Biology.
Grant reviewer for Dutch Cancer Society (KWF Kankerbestrijding)
Grant reviewer for Siteman Cancer Center Investment Program